What you are doing with cycling, as you say, is setting up the means to convert ammonia and nitrite to nitrate. The plants need and will utilize the nitrate, but they cannot utilize the others and they are toxic to fish. These compounds arise usually from the urea produced as a waste product from the fish. This conversion should take place almost imediately,and is carried out by bacteria. These bacteria need these compounds also so the whole system is a living thing. When you introduce more fish or use antibiotics it changes the balance and it takes a while for the equation to even up again.